Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2018165..2018436 | Replicon | chromosome |
| Accession | NZ_CP122617 | ||
| Organism | Escherichia coli strain ETEC4091 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2018295..2018398 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2018165..2018436 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDW52_RS09725 | 2014720..2015382 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QDW52_RS09730 | 2015406..2016062 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDW52_RS09735 | 2016164..2016394 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDW52_RS09740 | 2016533..2016907 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QDW52_RS09745 | 2016911..2017783 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| QDW52_RS09750 | 2017796..2018137 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2018165..2018436 | - | 272 | - | - | Antitoxin |
| - | 2018295..2018398 | + | 104 | - | - | Toxin |
| QDW52_RS09755 | 2018533..2019189 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| QDW52_RS09760 | 2019190..2019381 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QDW52_RS09765 | 2019486..2019722 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QDW52_RS09770 | 2019840..2021279 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277330 NZ_CP122617:2018295-2018398 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277330 NZ_CP122617:c2018436-2018165 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
