Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2137951..2138222 | Replicon | chromosome |
| Accession | NZ_CP122600 | ||
| Organism | Escherichia coli strain ETEC6333 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2138081..2138184 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2137951..2138222 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDX83_RS10360 | 2134506..2135168 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QDX83_RS10365 | 2135192..2135848 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDX83_RS10370 | 2135950..2136180 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDX83_RS10375 | 2136319..2136693 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| QDX83_RS10380 | 2136697..2137569 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| QDX83_RS10385 | 2137582..2137923 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2137951..2138222 | - | 272 | - | - | Antitoxin |
| - | 2138081..2138184 | + | 104 | - | - | Toxin |
| QDX83_RS10390 | 2138319..2138975 | + | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| QDX83_RS10395 | 2138976..2139167 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QDX83_RS10400 | 2139272..2139508 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QDX83_RS10405 | 2139626..2141065 | - | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2115397..2154062 | 38665 | |
| - | inside | Prophage | - | - | 2113457..2154062 | 40605 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277275 NZ_CP122600:2138081-2138184 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277275 NZ_CP122600:c2138222-2137951 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
