Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2116499..2116770 | Replicon | chromosome |
| Accession | NZ_CP122588 | ||
| Organism | Escherichia coli strain ETEC6335 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2116629..2116732 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2116499..2116770 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDY30_RS10265 | 2113054..2113716 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QDY30_RS10270 | 2113740..2114396 | - | 657 | WP_000011655.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QDY30_RS10275 | 2114498..2114728 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QDY30_RS10280 | 2114867..2115241 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QDY30_RS10285 | 2115245..2116117 | + | 873 | WP_001549302.1 | copper homeostasis membrane protein CopD | - |
| QDY30_RS10290 | 2116130..2116471 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2116499..2116770 | - | 272 | - | - | Antitoxin |
| - | 2116629..2116732 | + | 104 | - | - | Toxin |
| QDY30_RS10295 | 2116867..2117523 | + | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| QDY30_RS10300 | 2117524..2117715 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QDY30_RS10305 | 2117820..2118056 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QDY30_RS10310 | 2118174..2119613 | - | 1440 | WP_086217373.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277238 NZ_CP122588:2116629-2116732 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277238 NZ_CP122588:c2116770-2116499 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
