Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2079764..2079909 | Replicon | chromosome |
| Accession | NZ_CP122587 | ||
| Organism | Klebsiella pneumoniae strain NCRE-61 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2079800..2079902 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2079764..2079909 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDV36_RS14405 (QDV36_14410) | 2074894..2076954 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QDV36_RS14410 (QDV36_14415) | 2076958..2077617 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QDV36_RS14415 (QDV36_14420) | 2077696..2077926 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QDV36_RS14420 (QDV36_14425) | 2078039..2078413 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| QDV36_RS14425 (QDV36_14430) | 2078417..2079286 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| QDV36_RS14430 (QDV36_14435) | 2079303..2079641 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2079764..2079909 | - | 146 | - | - | Antitoxin |
| - | 2079800..2079902 | + | 103 | - | - | Toxin |
| QDV36_RS14435 (QDV36_14440) | 2080278..2080421 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| QDV36_RS14440 (QDV36_14445) | 2080526..2081494 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| QDV36_RS14445 (QDV36_14450) | 2081651..2082304 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| QDV36_RS14450 (QDV36_14455) | 2082301..2082492 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QDV36_RS14455 (QDV36_14460) | 2082590..2082829 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QDV36_RS14460 (QDV36_14465) | 2082945..2084378 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T277223 NZ_CP122587:2079800-2079902 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT277223 NZ_CP122587:c2079909-2079764 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
