Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1911435..1911580 | Replicon | chromosome |
| Accession | NZ_CP122578 | ||
| Organism | Klebsiella pneumoniae strain KP-2683-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1911471..1911573 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1911435..1911580 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDV38_RS12025 | 1906565..1908625 | + | 2061 | WP_279956715.1 | oligopeptidase B | - |
| QDV38_RS12030 | 1908629..1909288 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QDV38_RS12035 | 1909367..1909597 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QDV38_RS12040 | 1909710..1910084 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QDV38_RS12045 | 1910088..1910957 | + | 870 | WP_014907333.1 | copper homeostasis membrane protein CopD | - |
| QDV38_RS12050 | 1910974..1911312 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1911435..1911580 | - | 146 | - | - | Antitoxin |
| - | 1911471..1911573 | + | 103 | - | - | Toxin |
| QDV38_RS12055 | 1911948..1912091 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QDV38_RS12060 | 1912196..1913164 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| QDV38_RS12065 | 1913321..1913974 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| QDV38_RS12070 | 1913971..1914162 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QDV38_RS12075 | 1914260..1914499 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QDV38_RS12080 | 1914615..1916048 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T277204 NZ_CP122578:1911471-1911573 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT277204 NZ_CP122578:c1911580-1911435 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
