Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1985187..1985332 | Replicon | chromosome |
| Accession | NZ_CP122573 | ||
| Organism | Klebsiella pneumoniae strain KP2185 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1985223..1985325 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1985187..1985332 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QDV37_RS13650 (QDV37_13660) | 1980317..1982377 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| QDV37_RS13655 (QDV37_13665) | 1982381..1983040 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QDV37_RS13660 (QDV37_13670) | 1983119..1983349 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QDV37_RS13665 (QDV37_13675) | 1983462..1983836 | + | 375 | WP_039819395.1 | CopC domain-containing protein YobA | - |
| QDV37_RS13670 (QDV37_13680) | 1983840..1984709 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| QDV37_RS13675 (QDV37_13685) | 1984726..1985064 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1985187..1985332 | - | 146 | - | - | Antitoxin |
| - | 1985223..1985325 | + | 103 | - | - | Toxin |
| QDV37_RS13680 (QDV37_13690) | 1985701..1985844 | - | 144 | WP_038431282.1 | Ecr family regulatory small membrane protein | - |
| QDV37_RS13685 (QDV37_13695) | 1985949..1986917 | - | 969 | WP_014907334.1 | VirK/YbjX family protein | - |
| QDV37_RS13690 (QDV37_13700) | 1987074..1987727 | + | 654 | WP_024622748.1 | protein-serine/threonine phosphatase | - |
| QDV37_RS13695 (QDV37_13705) | 1987724..1987915 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QDV37_RS13700 (QDV37_13710) | 1988013..1988252 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QDV37_RS13705 (QDV37_13715) | 1988368..1989801 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T277186 NZ_CP122573:1985223-1985325 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT277186 NZ_CP122573:c1985332-1985187 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
