Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2014618..2014889 | Replicon | chromosome |
| Accession | NZ_CP122517 | ||
| Organism | Escherichia coli strain MY1-8 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2014748..2014851 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2014618..2014889 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCL60_RS09660 | 2011173..2011835 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QCL60_RS09665 | 2011859..2012515 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QCL60_RS09670 | 2012617..2012847 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QCL60_RS09675 | 2012986..2013360 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QCL60_RS09680 | 2013364..2014236 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| QCL60_RS09685 | 2014249..2014590 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2014618..2014889 | - | 272 | - | - | Antitoxin |
| - | 2014748..2014851 | + | 104 | - | - | Toxin |
| QCL60_RS09690 | 2015040..2015642 | + | 603 | WP_247856325.1 | protein-serine/threonine phosphatase | - |
| QCL60_RS09695 | 2015643..2015834 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QCL60_RS09700 | 2015939..2016175 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QCL60_RS09705 | 2016293..2017732 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277142 NZ_CP122517:2014748-2014851 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277142 NZ_CP122517:c2014889-2014618 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
