Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2020055..2020326 | Replicon | chromosome |
| Accession | NZ_CP122507 | ||
| Organism | Escherichia coli strain W444 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2020185..2020288 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2020055..2020326 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QC806_RS09930 | 2016611..2017273 | - | 663 | WP_000944249.1 | exodeoxyribonuclease X | - |
| QC806_RS09935 | 2017296..2017952 | - | 657 | WP_021577595.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QC806_RS09940 | 2018054..2018284 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QC806_RS09945 | 2018423..2018797 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QC806_RS09950 | 2018801..2019673 | + | 873 | WP_284632160.1 | copper homeostasis membrane protein CopD | - |
| QC806_RS09955 | 2019686..2020027 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2020055..2020326 | - | 272 | - | - | Antitoxin |
| - | 2020185..2020288 | + | 104 | - | - | Toxin |
| QC806_RS09960 | 2020423..2021079 | + | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| QC806_RS09965 | 2021080..2021271 | - | 192 | WP_001313035.1 | YebW family protein | - |
| QC806_RS09970 | 2021376..2021612 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QC806_RS09975 | 2021730..2023169 | - | 1440 | WP_096320361.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277103 NZ_CP122507:2020185-2020288 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277103 NZ_CP122507:c2020326-2020055 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
