Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2065700..2065971 | Replicon | chromosome |
| Accession | NZ_CP122499 | ||
| Organism | Escherichia coli strain W409 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2065830..2065933 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2065700..2065971 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QC809_RS10200 | 2062256..2062918 | - | 663 | WP_063084778.1 | exodeoxyribonuclease X | - |
| QC809_RS10205 | 2062942..2063598 | - | 657 | WP_000011657.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QC809_RS10210 | 2063700..2063930 | - | 231 | WP_115903867.1 | DNA polymerase III subunit theta | - |
| QC809_RS10215 | 2064069..2064443 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QC809_RS10220 | 2064447..2065319 | + | 873 | WP_000879294.1 | copper homeostasis membrane protein CopD | - |
| QC809_RS10225 | 2065332..2065673 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2065700..2065971 | - | 272 | - | - | Antitoxin |
| - | 2065830..2065933 | + | 104 | - | - | Toxin |
| QC809_RS10230 | 2066068..2066724 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| QC809_RS10235 | 2066725..2066916 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QC809_RS10240 | 2067021..2067257 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QC809_RS10245 | 2067375..2068814 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277052 NZ_CP122499:2065830-2065933 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277052 NZ_CP122499:c2065971-2065700 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTAGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
