Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1913345..1913616 | Replicon | chromosome |
| Accession | NZ_CP122496 | ||
| Organism | Escherichia coli strain a7 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1913475..1913578 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1913345..1913616 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QC805_RS09285 | 1909900..1910562 | - | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
| QC805_RS09290 | 1910586..1911242 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QC805_RS09295 | 1911344..1911574 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QC805_RS09300 | 1911713..1912087 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QC805_RS09305 | 1912091..1912963 | + | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| QC805_RS09310 | 1912976..1913317 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 1913345..1913616 | - | 272 | - | - | Antitoxin |
| - | 1913475..1913578 | + | 104 | - | - | Toxin |
| QC805_RS09315 | 1913713..1914369 | + | 657 | WP_000812732.1 | protein-serine/threonine phosphatase | - |
| QC805_RS09320 | 1914370..1914561 | - | 192 | WP_001338167.1 | YebW family protein | - |
| QC805_RS09325 | 1914666..1914902 | - | 237 | WP_001338166.1 | YebV family protein | - |
| QC805_RS09330 | 1915020..1916459 | - | 1440 | WP_203069654.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277031 NZ_CP122496:1913475-1913578 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277031 NZ_CP122496:c1913616-1913345 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
