Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1992852..1993123 | Replicon | chromosome |
| Accession | NZ_CP122492 | ||
| Organism | Escherichia coli strain a15 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1992982..1993085 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1992852..1993123 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QC807_RS09565 | 1989407..1990069 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QC807_RS09570 | 1990093..1990749 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QC807_RS09575 | 1990851..1991081 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QC807_RS09580 | 1991220..1991594 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| QC807_RS09585 | 1991598..1992470 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| QC807_RS09590 | 1992483..1992824 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 1992852..1993123 | - | 272 | - | - | Antitoxin |
| - | 1992982..1993085 | + | 104 | - | - | Toxin |
| QC807_RS09595 | 1993220..1993876 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| QC807_RS09600 | 1993877..1994068 | - | 192 | WP_001296140.1 | YebW family protein | - |
| QC807_RS09605 | 1994173..1994409 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QC807_RS09610 | 1994527..1995966 | - | 1440 | WP_001512833.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T277002 NZ_CP122492:1992982-1993085 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT277002 NZ_CP122492:c1993123-1992852 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
