Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1806997..1807142 | Replicon | chromosome |
| Accession | NZ_CP122469 | ||
| Organism | Klebsiella pneumoniae subsp. pneumoniae strain IITJ_BC16 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1807033..1807135 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1806997..1807142 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P9M40_RS08765 | 1802127..1804187 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| P9M40_RS08770 | 1804191..1804850 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| P9M40_RS08775 | 1804929..1805159 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| P9M40_RS08780 | 1805272..1805646 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| P9M40_RS08785 | 1805650..1806519 | + | 870 | WP_009307538.1 | copper homeostasis membrane protein CopD | - |
| P9M40_RS08790 | 1806536..1806874 | + | 339 | WP_009307539.1 | YebY family protein | - |
| - | 1806997..1807142 | - | 146 | - | - | Antitoxin |
| - | 1807033..1807135 | + | 103 | - | - | Toxin |
| P9M40_RS08795 | 1807511..1807654 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| P9M40_RS08800 | 1807759..1808727 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| P9M40_RS08805 | 1808884..1809537 | + | 654 | WP_009307541.1 | protein-serine/threonine phosphatase | - |
| P9M40_RS08810 | 1809534..1809725 | - | 192 | WP_002911395.1 | YebW family protein | - |
| P9M40_RS08815 | 1809823..1810062 | - | 240 | WP_002911393.1 | YebV family protein | - |
| P9M40_RS08820 | 1810178..1811611 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T276980 NZ_CP122469:1807033-1807135 [Klebsiella pneumoniae subsp. pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT276980 NZ_CP122469:c1807142-1806997 [Klebsiella pneumoniae subsp. pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
