Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3131593..3131861 | Replicon | chromosome |
| Accession | NZ_CP122454 | ||
| Organism | Escherichia coli strain 82.0311 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3131631..3131733 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3131593..3131861 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QBY76_RS15565 | 3128749..3130188 | + | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QBY76_RS15570 | 3130307..3130543 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QBY76_RS15575 | 3130648..3130839 | + | 192 | WP_024186842.1 | YebW family protein | - |
| QBY76_RS15580 | 3130840..3131496 | - | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| - | 3131593..3131861 | + | 269 | - | - | Antitoxin |
| - | 3131631..3131733 | - | 103 | - | - | Toxin |
| QBY76_RS15585 | 3131891..3132232 | - | 342 | WP_001357782.1 | YebY family protein | - |
| QBY76_RS15590 | 3132245..3133117 | - | 873 | WP_087598017.1 | copper homeostasis membrane protein CopD | - |
| QBY76_RS15595 | 3133121..3133495 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QBY76_RS15600 | 3133634..3133864 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QBY76_RS15605 | 3133966..3134622 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QBY76_RS15610 | 3134646..3135308 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T276928 NZ_CP122454:c3131733-3131631 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT276928 NZ_CP122454:3131593-3131861 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
