Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2209865..2210133 | Replicon | chromosome |
| Accession | NZ_CP122451 | ||
| Organism | Escherichia coli strain 82.0312 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2209993..2210095 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2209865..2210133 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QBY78_RS10400 | 2206418..2207080 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QBY78_RS10405 | 2207104..2207760 | - | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QBY78_RS10410 | 2207862..2208092 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QBY78_RS10415 | 2208231..2208605 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QBY78_RS10420 | 2208609..2209481 | + | 873 | WP_087598017.1 | copper homeostasis membrane protein CopD | - |
| QBY78_RS10425 | 2209494..2209835 | + | 342 | WP_001357782.1 | YebY family protein | - |
| - | 2209865..2210133 | - | 269 | - | - | Antitoxin |
| - | 2209993..2210095 | + | 103 | - | - | Toxin |
| QBY78_RS10430 | 2210230..2210886 | + | 657 | WP_000812744.1 | protein-serine/threonine phosphatase | - |
| QBY78_RS10435 | 2210887..2211078 | - | 192 | WP_024186842.1 | YebW family protein | - |
| QBY78_RS10440 | 2211183..2211419 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QBY78_RS10445 | 2211538..2212977 | - | 1440 | WP_024186841.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T276903 NZ_CP122451:2209993-2210095 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT276903 NZ_CP122451:c2210133-2209865 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
