Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2318674..2318826 | Replicon | chromosome |
| Accession | NZ_CP122442 | ||
| Organism | Enterobacter ludwigii strain I9455333cz | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2318688..2318791 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2318674..2318826 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCL67_RS11280 (QCL67_11280) | 2314949..2316391 | + | 1443 | WP_182269098.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QCL67_RS11285 (QCL67_11285) | 2316497..2316736 | + | 240 | WP_020883412.1 | YebV family protein | - |
| QCL67_RS11290 (QCL67_11290) | 2316771..2317414 | - | 644 | Protein_2221 | protein-serine/threonine phosphatase | - |
| QCL67_RS11295 (QCL67_11295) | 2317582..2318523 | + | 942 | WP_059306269.1 | VirK/YbjX family protein | - |
| - | 2318674..2318826 | + | 153 | - | - | Antitoxin |
| - | 2318688..2318791 | - | 104 | - | - | Toxin |
| QCL67_RS11300 (QCL67_11300) | 2318930..2319268 | - | 339 | WP_121339451.1 | YebY family protein | - |
| QCL67_RS11305 (QCL67_11305) | 2319285..2320154 | - | 870 | WP_121339449.1 | copper homeostasis membrane protein CopD | - |
| QCL67_RS11310 (QCL67_11310) | 2320156..2320527 | - | 372 | WP_153852777.1 | CopC domain-containing protein YobA | - |
| QCL67_RS11315 (QCL67_11315) | 2320665..2320895 | + | 231 | WP_013096102.1 | DNA polymerase III subunit theta | - |
| QCL67_RS11320 (QCL67_11320) | 2321005..2321655 | + | 651 | WP_073396013.1 | carbon-nitrogen hydrolase family protein | - |
| QCL67_RS11325 (QCL67_11325) | 2321680..2322342 | + | 663 | WP_014170626.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2309574..2385590 | 76016 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T276856 NZ_CP122442:c2318791-2318688 [Enterobacter ludwigii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 153 bp
>AT276856 NZ_CP122442:2318674-2318826 [Enterobacter ludwigii]
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
GCTTTCAATCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCG
CTAAAAGTTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
