Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | relBE/RHH(antitoxin) |
| Location | 2722683..2723233 | Replicon | chromosome |
| Accession | NZ_CP122407 | ||
| Organism | Rugamonas sp. DEMB1 | ||
Toxin (Protein)
| Gene name | relE | Uniprot ID | - |
| Locus tag | QC826_RS12350 | Protein ID | WP_279766459.1 |
| Coordinates | 2722958..2723233 (+) | Length | 92 a.a. |
Antitoxin (Protein)
| Gene name | relB | Uniprot ID | - |
| Locus tag | QC826_RS12345 | Protein ID | WP_279765881.1 |
| Coordinates | 2722683..2722958 (+) | Length | 92 a.a. |
Genomic Context
Location: 2718742..2719374 (633 bp)
Type: Others
Protein ID: WP_279765875.1
Type: Others
Protein ID: WP_279765875.1
Location: 2719553..2720161 (609 bp)
Type: Others
Protein ID: WP_279765876.1
Type: Others
Protein ID: WP_279765876.1
Location: 2720242..2720667 (426 bp)
Type: Others
Protein ID: WP_279765877.1
Type: Others
Protein ID: WP_279765877.1
Location: 2721865..2722557 (693 bp)
Type: Others
Protein ID: WP_279765880.1
Type: Others
Protein ID: WP_279765880.1
Location: 2722683..2722958 (276 bp)
Type: Antitoxin
Protein ID: WP_279765881.1
Type: Antitoxin
Protein ID: WP_279765881.1
Location: 2722958..2723233 (276 bp)
Type: Toxin
Protein ID: WP_279766459.1
Type: Toxin
Protein ID: WP_279766459.1
Location: 2726539..2727549 (1011 bp)
Type: Others
Protein ID: WP_279765884.1
Type: Others
Protein ID: WP_279765884.1
Location: 2720672..2721295 (624 bp)
Type: Others
Protein ID: WP_279765878.1
Type: Others
Protein ID: WP_279765878.1
Location: 2721322..2721696 (375 bp)
Type: Others
Protein ID: WP_279765879.1
Type: Others
Protein ID: WP_279765879.1
Location: 2723252..2726344 (3093 bp)
Type: Others
Protein ID: WP_279765883.1
Type: Others
Protein ID: WP_279765883.1
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Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QC826_RS12315 (QC826_12315) | 2718742..2719374 | + | 633 | WP_279765875.1 | 2OG-Fe(II) oxygenase | - |
| QC826_RS12320 (QC826_12320) | 2719553..2720161 | + | 609 | WP_279765876.1 | TetR/AcrR family transcriptional regulator | - |
| QC826_RS12325 (QC826_12325) | 2720242..2720667 | + | 426 | WP_279765877.1 | hypothetical protein | - |
| QC826_RS12330 (QC826_12330) | 2720672..2721295 | - | 624 | WP_279765878.1 | response regulator transcription factor | - |
| QC826_RS12335 (QC826_12335) | 2721322..2721696 | - | 375 | WP_279765879.1 | hypothetical protein | - |
| QC826_RS12340 (QC826_12340) | 2721865..2722557 | + | 693 | WP_279765880.1 | response regulator transcription factor | - |
| QC826_RS12345 (QC826_12345) | 2722683..2722958 | + | 276 | WP_279765881.1 | ribbon-helix-helix domain-containing protein | Antitoxin |
| QC826_RS12350 (QC826_12350) | 2722958..2723233 | + | 276 | WP_279766459.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
| QC826_RS12355 (QC826_12355) | 2723252..2726344 | - | 3093 | WP_279765883.1 | two-component regulator propeller domain-containing protein | - |
| QC826_RS12360 (QC826_12360) | 2726539..2727549 | + | 1011 | WP_279765884.1 | alpha/beta hydrolase | - |
Associated MGEs
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MGE detail | Similar MGEs | Relative position | MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.