Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 270985..271128 | Replicon | chromosome |
| Accession | NZ_CP122401 | ||
| Organism | Enterobacter roggenkampii strain EOBSR_19 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 271020..271123 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 270985..271128 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCD67_RS01400 (QCD67_01400) | 267468..268130 | - | 663 | WP_008500463.1 | exodeoxyribonuclease X | - |
| QCD67_RS01405 (QCD67_01405) | 268155..268805 | - | 651 | WP_008500464.1 | carbon-nitrogen hydrolase family protein | - |
| QCD67_RS01410 (QCD67_01410) | 268916..269146 | - | 231 | WP_008500465.1 | DNA polymerase III subunit theta | - |
| QCD67_RS01415 (QCD67_01415) | 269284..269655 | + | 372 | WP_045352265.1 | CopC domain-containing protein YobA | - |
| QCD67_RS01420 (QCD67_01420) | 269657..270526 | + | 870 | WP_008500467.1 | copper homeostasis membrane protein CopD | - |
| QCD67_RS01425 (QCD67_01425) | 270543..270881 | + | 339 | WP_008500468.1 | YebY family protein | - |
| - | 270985..271128 | - | 144 | - | - | Antitoxin |
| - | 271020..271123 | + | 104 | - | - | Toxin |
| QCD67_RS01430 (QCD67_01430) | 271287..272228 | - | 942 | WP_025910080.1 | VirK/YbjX family protein | - |
| QCD67_RS01435 (QCD67_01435) | 272405..273049 | + | 645 | WP_279794725.1 | protein-serine/threonine phosphatase | - |
| QCD67_RS01440 (QCD67_01440) | 273084..273323 | - | 240 | WP_008500472.1 | YebV family protein | - |
| QCD67_RS01445 (QCD67_01445) | 273430..274872 | - | 1443 | WP_279794726.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T276832 NZ_CP122401:271020-271123 [Enterobacter roggenkampii]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT276832 NZ_CP122401:c271128-270985 [Enterobacter roggenkampii]
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
CAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
