Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2070008..2070153 | Replicon | chromosome |
| Accession | NZ_CP122389 | ||
| Organism | Klebsiella pneumoniae strain KP9650 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2070044..2070146 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2070008..2070153 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCB43_RS10105 (QCB43_10105) | 2065138..2067198 | + | 2061 | WP_032446301.1 | oligopeptidase B | - |
| QCB43_RS10110 (QCB43_10110) | 2067202..2067861 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| QCB43_RS10115 (QCB43_10115) | 2067940..2068170 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| QCB43_RS10120 (QCB43_10120) | 2068283..2068657 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| QCB43_RS10125 (QCB43_10125) | 2068661..2069530 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| QCB43_RS10130 (QCB43_10130) | 2069547..2069885 | + | 339 | WP_023301072.1 | YebY family protein | - |
| - | 2070008..2070153 | - | 146 | - | - | Antitoxin |
| - | 2070044..2070146 | + | 103 | - | - | Toxin |
| QCB43_RS10135 (QCB43_10135) | 2070521..2070664 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| QCB43_RS10140 (QCB43_10140) | 2070769..2071737 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| QCB43_RS10145 (QCB43_10145) | 2071894..2072547 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| QCB43_RS10150 (QCB43_10150) | 2072544..2072735 | - | 192 | WP_002911395.1 | YebW family protein | - |
| QCB43_RS10155 (QCB43_10155) | 2072833..2073072 | - | 240 | WP_002911393.1 | YebV family protein | - |
| QCB43_RS10160 (QCB43_10160) | 2073188..2074621 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T276816 NZ_CP122389:2070044-2070146 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT276816 NZ_CP122389:c2070153-2070008 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
