Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 75626..76161 Replicon plasmid pPAB03
Accession NZ_CP122326
Organism Pantoea agglomerans pv. betae strain 4188

Toxin (Protein)


Gene name relE Uniprot ID A0A8X8DPA1
Locus tag A7P61_RS02920 Protein ID WP_010257115.1
Coordinates 75874..76161 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag A7P61_RS02915 Protein ID WP_064703455.1
Coordinates 75626..75877 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
A7P61_RS02895 (A7P61_02895) 71233..71502 - 270 WP_064703451.1 DUF1471 family periplasmic protein YahO -
A7P61_RS02900 (A7P61_02900) 71775..72911 - 1137 WP_064703452.1 HlyD family secretion protein -
A7P61_RS02905 (A7P61_02905) 72913..73239 - 327 WP_064703453.1 DUF3302 domain-containing protein -
A7P61_RS02910 (A7P61_02910) 73833..75485 + 1653 WP_064703454.1 intermembrane transport protein PqiB -
A7P61_RS02915 (A7P61_02915) 75626..75877 + 252 WP_064703455.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
A7P61_RS02920 (A7P61_02920) 75874..76161 + 288 WP_010257115.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
A7P61_RS02925 (A7P61_02925) 76524..76838 + 315 WP_031593845.1 hypothetical protein -
A7P61_RS02930 (A7P61_02930) 76835..77653 - 819 WP_064703456.1 DUF4225 domain-containing protein -
A7P61_RS02935 (A7P61_02935) 77989..78684 + 696 WP_064703457.1 haloacid dehalogenase type II -
A7P61_RS02940 (A7P61_02940) 78722..80251 - 1530 WP_064703458.1 Fic family protein -
A7P61_RS02945 (A7P61_02945) 80398..80763 - 366 WP_064703459.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF -
A7P61_RS02950 (A7P61_02950) 80760..81080 - 321 WP_022624286.1 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Mobilizable plasmid - - 1..178621 178621


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(5-86)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11173.08 Da        Isoelectric Point: 10.3856

>T276800 WP_010257115.1 NZ_CP122326:75874-76161 [Pantoea agglomerans pv. betae]
VSYTVKFREEAFKEWQKLDKSLQQQFAKKLKKCCDNPHIPSARLRGIKDCYKIKLRASGFRLVYQVIDDQLVIAVVAVGK
RERSDVYHLASERMR

Download         Length: 288 bp

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9130.43 Da        Isoelectric Point: 4.1630

>AT276800 WP_064703455.1 NZ_CP122326:75626-75877 [Pantoea agglomerans pv. betae]
MPNIILSDTSASVSELKKNPMATVNAGHGYPVAILNRNQPAFYCVPAELYEQMLDALDDQELVKLVSERSGQRLLDVDLD
ALL

Download         Length: 252 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References