Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4358917..4359188 | Replicon | chromosome |
| Accession | NZ_CP122319 | ||
| Organism | Escherichia coli strain BW25113 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4358955..4359058 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4358917..4359188 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG47_RS21215 | 4356074..4357513 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QCG47_RS21220 | 4357631..4357867 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QCG47_RS21225 | 4357972..4358163 | + | 192 | WP_000457842.1 | YebW family protein | - |
| QCG47_RS21230 | 4358164..4358820 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 4358917..4359188 | + | 272 | - | - | Antitoxin |
| - | 4358955..4359058 | - | 104 | - | - | Toxin |
| QCG47_RS21235 | 4359216..4359557 | - | 342 | WP_000976476.1 | YebY family protein | - |
| QCG47_RS21240 | 4359570..4360442 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| QCG47_RS21245 | 4360446..4360820 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QCG47_RS21250 | 4360959..4361189 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QCG47_RS21255 | 4361291..4361947 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QCG47_RS21260 | 4361971..4362633 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T276778 NZ_CP122319:c4359058-4358955 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT276778 NZ_CP122319:4358917-4359188 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
