Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 991377..991648 | Replicon | chromosome |
| Accession | NZ_CP122318 | ||
| Organism | Escherichia coli strain HT873X1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 991507..991610 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 991377..991648 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG45_RS04755 | 987932..988594 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QCG45_RS04760 | 988618..989274 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QCG45_RS04765 | 989376..989606 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QCG45_RS04770 | 989745..990119 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QCG45_RS04775 | 990123..990995 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| QCG45_RS04780 | 991008..991349 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 991377..991648 | - | 272 | - | - | Antitoxin |
| - | 991507..991610 | + | 104 | - | - | Toxin |
| QCG45_RS04785 | 991745..992401 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| QCG45_RS04790 | 992402..992593 | - | 192 | WP_000457842.1 | YebW family protein | - |
| QCG45_RS04795 | 992698..992934 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QCG45_RS04800 | 993052..994491 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T276725 NZ_CP122318:991507-991610 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT276725 NZ_CP122318:c991648-991377 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
