Detailed information of TA system
Overview
TA module
| Type | II | Classification (family/domain) | rnlAB/RnlA-RnlB |
| Location | 1296531..1297968 | Replicon | chromosome |
| Accession | NZ_CP122317 | ||
| Organism | Escherichia coli strain HT-948 | ||
Toxin (Protein)
| Gene name | rnlA | Uniprot ID | P52129 |
| Locus tag | QCG49_RS06310 | Protein ID | WP_000155570.1 |
| Coordinates | 1296531..1297604 (+) | Length | 358 a.a. |
Antitoxin (Protein)
| Gene name | rnlB | Uniprot ID | P52130 |
| Locus tag | QCG49_RS06315 | Protein ID | WP_000461704.1 |
| Coordinates | 1297597..1297968 (+) | Length | 124 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG49_RS06295 (1291964) | 1291964..1294153 | - | 2190 | WP_000136402.1 | DEAD/DEAH box helicase | - |
| QCG49_RS06300 (1294150) | 1294150..1295766 | - | 1617 | WP_000445380.1 | anti-bacteriophage protein AbpA | - |
| QCG49_RS06305 (1296126) | 1296126..1296389 | - | 264 | WP_000502050.1 | DUF1524 domain-containing protein | - |
| QCG49_RS06310 (1296531) | 1296531..1297604 | + | 1074 | WP_000155570.1 | type II toxin-antitoxin system toxin mRNA endoribonuclease RnlA | Toxin |
| QCG49_RS06315 (1297597) | 1297597..1297968 | + | 372 | WP_000461704.1 | type II toxin-antitoxin system antitoxin RnlB | Antitoxin |
| QCG49_RS06320 (1298323) | 1298323..1299186 | + | 864 | WP_000787597.1 | GTPase family protein | - |
| QCG49_RS06325 (1299278) | 1299278..1300099 | + | 822 | WP_000197391.1 | DUF932 domain-containing protein | - |
| QCG49_RS06330 (1300316) | 1300316..1301017 | + | 702 | WP_000189409.1 | WYL domain-containing protein | - |
| QCG49_RS06335 (1301058) | 1301058..1301294 | + | 237 | WP_001144029.1 | protein YpjK | - |
| QCG49_RS06340 (1301294) | 1301294..1301737 | + | 444 | WP_000824222.1 | lipoprotein YfjS | - |
| QCG49_RS06345 (1301761) | 1301761..1302228 | + | 468 | WP_000702495.1 | protein YfjT | - |
| QCG49_RS06350 (1302615) | 1302615..1302767 | - | 153 | Protein_1245 | arsenate reductase | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 358 a.a. Molecular weight: 40061.13 Da Isoelectric Point: 6.8293
>T276695 WP_000155570.1 NZ_CP122317:1296531-1297604 [Escherichia coli]
MTIRSYKNLNLVRANIETESRQFIENKNYSIQSIGPMPGSRAGLRVVFTRPGVNLATVDIFYNGDGSTTIQYLTGANRSL
GQELADHLFETINPAEFEQVNMVLQGFVETSVLPVLELSADESHIEFREHSRNAHTVVWKIISTSYQDELTVSLHITTGK
LQIQGRPLSCYRVFTFNLAALLDLQGLEKVLIRQEDGKANIVQQEVARTYLQTVMADAYPHLHVTAEKLLVSGLCVKLAA
PDLPDYCMLLYPELRTIEGVLKSKMSGLGMPVQQPAGFGTYFDKPAAHYILKPQFAATLRPEQINIISTAYTFFNVERHS
LFHMETVVDASRMISDMARLMGKATRAWGIIKDLYIV
MTIRSYKNLNLVRANIETESRQFIENKNYSIQSIGPMPGSRAGLRVVFTRPGVNLATVDIFYNGDGSTTIQYLTGANRSL
GQELADHLFETINPAEFEQVNMVLQGFVETSVLPVLELSADESHIEFREHSRNAHTVVWKIISTSYQDELTVSLHITTGK
LQIQGRPLSCYRVFTFNLAALLDLQGLEKVLIRQEDGKANIVQQEVARTYLQTVMADAYPHLHVTAEKLLVSGLCVKLAA
PDLPDYCMLLYPELRTIEGVLKSKMSGLGMPVQQPAGFGTYFDKPAAHYILKPQFAATLRPEQINIISTAYTFFNVERHS
LFHMETVVDASRMISDMARLMGKATRAWGIIKDLYIV
Download Length: 1074 bp
Antitoxin
Download Length: 124 a.a. Molecular weight: 13664.69 Da Isoelectric Point: 4.2391
>AT276695 WP_000461704.1 NZ_CP122317:1297597-1297968 [Escherichia coli]
MFEITGINVSGALKAVVMATGFENPLSSVNEIETKLSALLGSETTGEILFDLLCANGPEWNRFVTLEMKYGRIMLDTAKI
IDEQDVPTHILSKLTFTLRNHPEYLEASVLSPDDVRQVLSMDF
MFEITGINVSGALKAVVMATGFENPLSSVNEIETKLSALLGSETTGEILFDLLCANGPEWNRFVTLEMKYGRIMLDTAKI
IDEQDVPTHILSKLTFTLRNHPEYLEASVLSPDDVRQVLSMDF
Download Length: 372 bp
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|