Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 454577..454848 | Replicon | chromosome |
| Accession | NZ_CP122317 | ||
| Organism | Escherichia coli strain HT-948 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 454615..454718 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 454577..454848 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG49_RS02260 | 451734..453173 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| QCG49_RS02265 | 453291..453527 | + | 237 | WP_001295499.1 | YebV family protein | - |
| QCG49_RS02270 | 453632..453823 | + | 192 | WP_000457842.1 | YebW family protein | - |
| QCG49_RS02275 | 453824..454480 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 454577..454848 | + | 272 | - | - | Antitoxin |
| - | 454615..454718 | - | 104 | - | - | Toxin |
| QCG49_RS02280 | 454876..455217 | - | 342 | WP_000976476.1 | YebY family protein | - |
| QCG49_RS02285 | 455230..456102 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| QCG49_RS02290 | 456106..456480 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QCG49_RS02295 | 456619..456849 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QCG49_RS02300 | 456951..457607 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QCG49_RS02305 | 457631..458293 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T276689 NZ_CP122317:c454718-454615 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT276689 NZ_CP122317:454577-454848 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
