Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 957963..958234 | Replicon | chromosome |
| Accession | NZ_CP122316 | ||
| Organism | Escherichia coli strain HT-946 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 958093..958196 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 957963..958234 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QCG48_RS04620 | 954518..955180 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| QCG48_RS04625 | 955204..955860 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| QCG48_RS04630 | 955962..956192 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| QCG48_RS04635 | 956331..956705 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| QCG48_RS04640 | 956709..957581 | + | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| QCG48_RS04645 | 957594..957935 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 957963..958234 | - | 272 | - | - | Antitoxin |
| - | 958093..958196 | + | 104 | - | - | Toxin |
| QCG48_RS04650 | 958331..958987 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| QCG48_RS04655 | 958988..959179 | - | 192 | WP_000457842.1 | YebW family protein | - |
| QCG48_RS04660 | 959284..959520 | - | 237 | WP_001295499.1 | YebV family protein | - |
| QCG48_RS04665 | 959638..961077 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T276663 NZ_CP122316:958093-958196 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT276663 NZ_CP122316:c958234-957963 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
