276601

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) omega-epsilon-zeta/zeta-epsilon
Location 334529..335700 Replicon chromosome
Accession NZ_CP122283
Organism Lysinibacillus capsici strain TSBLM

Toxin (Protein)


Gene name zeta Uniprot ID -
Locus tag QBO96_RS01945 Protein ID WP_004230941.1
Coordinates 334801..335700 (+) Length 300 a.a.

Antitoxin (Protein)


Gene name epsilon Uniprot ID -
Locus tag QBO96_RS01940 Protein ID WP_004230939.1
Coordinates 334529..334804 (+) Length 92 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QBO96_RS01910 (QBO96_01910) 330216..331175 + 960 WP_004230930.1 type IV secretory system conjugative DNA transfer family protein -
QBO96_RS01915 (QBO96_01915) 331209..331916 + 708 WP_004230931.1 hypothetical protein -
QBO96_RS01920 (QBO96_01920) 331952..332191 + 240 WP_004230933.1 PC4/YdbC family ssDNA-binding protein -
QBO96_RS01925 (QBO96_01925) 332195..333322 + 1128 WP_004230935.1 ATPase, T2SS/T4P/T4SS family -
QBO96_RS01930 (QBO96_01930) 333329..334069 + 741 WP_004230936.1 type II secretion system F family protein -
QBO96_RS01935 (QBO96_01935) 334130..334429 + 300 WP_004230937.1 hypothetical protein -
QBO96_RS01940 (QBO96_01940) 334529..334804 + 276 WP_004230939.1 hypothetical protein Antitoxin
QBO96_RS01945 (QBO96_01945) 334801..335700 + 900 WP_004230941.1 zeta toxin family protein Toxin
QBO96_RS01950 (QBO96_01950) 335714..335947 + 234 WP_004230943.1 hypothetical protein -
QBO96_RS01955 (QBO96_01955) 336145..337254 + 1110 WP_216486345.1 S-layer homology domain-containing protein -
QBO96_RS01960 (QBO96_01960) 337322..339373 + 2052 WP_066036887.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Zeta toxin domain

(24-216)

Antitoxin

Bacterial epsilon antitoxin

(5-89)


Sequences

Toxin        


Download         Length: 300 a.a.        Molecular weight: 34502.31 Da        Isoelectric Point: 6.7796

>T276601 WP_004230941.1 NZ_CP122283:334801-335700 [Lysinibacillus capsici]
MNKFDLAYFSEDEFQERLQFTIDRLSKKKKPFQKPVAYLLGGQAGAGKTTLHAIIKDKLNNDVITIDNDTFKQMHPNFDL
LVEKYGKDYVAHVTPFSNKMTEALIEHFSSQGFNLTIEGTLRTIETPMQTATSLKEKGYEVNLYAMAVSKDLSYLGTIER
YESMYLIDPQTARSTDKVIHDTIVSNLPDNLDMLFNSGYFAEISLFTREGTKVYSSVDTPSISPKQIIYEALNQEIPKDV
LINKIDHIIQLTKHNNHQVPDLLHWRKELIRQPISPFQDDEKKQDKVFNKVNKNKVFER

Download         Length: 900 bp

Antitoxin


Download         Length: 92 a.a.        Molecular weight: 10704.11 Da        Isoelectric Point: 4.5702

>AT276601 WP_004230939.1 NZ_CP122283:334529-334804 [Lysinibacillus capsici]
MEKSLNYEQTFKIEVLNEFSNGVYARLLNFILKNGVDKNDSNNFYVSLLQQFSEMLNVDLFKMSNVELDNVKSYWENMND
YIKGITKEKSA

Download         Length: 276 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References