Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-parE/ParE-RHH
Location 3691143..3691708 Replicon chromosome
Accession NZ_CP121662
Organism Rhizobium sp. CB3090

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag QA646_RS17705 Protein ID WP_283056678.1
Coordinates 3691415..3691708 (+) Length 98 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QA646_RS17700 Protein ID WP_283056677.1
Coordinates 3691143..3691427 (+) Length 95 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QA646_RS17680 (QA646_17680) 3686598..3688235 + 1638 WP_283056673.1 ABC transporter ATP-binding protein -
QA646_RS17685 (QA646_17685) 3688247..3689206 + 960 WP_283056674.1 glyoxylate/hydroxypyruvate reductase A -
QA646_RS17690 (QA646_17690) 3689284..3689559 + 276 WP_283056675.1 hypothetical protein -
QA646_RS17695 (QA646_17695) 3689750..3691054 + 1305 WP_283056676.1 nicotinate phosphoribosyltransferase -
QA646_RS17700 (QA646_17700) 3691143..3691427 + 285 WP_283056677.1 CopG family transcriptional regulator Antitoxin
QA646_RS17705 (QA646_17705) 3691415..3691708 + 294 WP_283056678.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QA646_RS17710 (QA646_17710) 3691716..3692273 - 558 WP_283056679.1 hypothetical protein -
QA646_RS17715 (QA646_17715) 3692248..3692406 - 159 WP_283056680.1 hypothetical protein -
QA646_RS17720 (QA646_17720) 3692433..3692699 - 267 WP_283056681.1 hypothetical protein -
QA646_RS17725 (QA646_17725) 3692993..3695005 + 2013 WP_283056682.1 mechanosensitive ion channel family protein -
QA646_RS17730 (QA646_17730) 3695015..3695743 - 729 WP_283056683.1 SDR family NAD(P)-dependent oxidoreductase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-94)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 11201.06 Da        Isoelectric Point: 11.2113

>T276517 WP_283056678.1 NZ_CP121662:3691415-3691708 [Rhizobium sp. CB3090]
MPSVRLTQRALRDLERMRTFLRPKNAAAAKKASTKIIQTIRMLSNQPDMGRPVENSQQGLRELIVRFGRDGYVVLYRYIG
EEILIAAIRHGREDGYK

Download         Length: 294 bp

Antitoxin


Download         Length: 95 a.a.        Molecular weight: 10862.03 Da        Isoelectric Point: 4.5714

>AT276517 WP_283056677.1 NZ_CP121662:3691143-3691427 [Rhizobium sp. CB3090]
MSPALKASVEIDSDVNERLEKLAASRHRRPERLLKEAVEQYVEREEKRDSLLQDARHSLDEYGVTGLYVTGDEVIAWLQT
WGDEDEKAPPECHR

Download         Length: 285 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References