Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) parDE/RHH(antitoxin)
Location 3095478..3096012 Replicon chromosome
Accession NZ_CP121662
Organism Rhizobium sp. CB3090

Toxin (Protein)


Gene name parE Uniprot ID -
Locus tag QA646_RS14890 Protein ID WP_283056189.1
Coordinates 3095478..3095780 (-) Length 101 a.a.

Antitoxin (Protein)


Gene name parD Uniprot ID -
Locus tag QA646_RS14895 Protein ID WP_283056190.1
Coordinates 3095770..3096012 (-) Length 81 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QA646_RS14870 (QA646_14870) 3090599..3092662 - 2064 WP_283056185.1 M3 family metallopeptidase -
QA646_RS14875 (QA646_14875) 3092759..3093400 - 642 WP_283056186.1 LysE family translocator -
QA646_RS14880 (QA646_14880) 3093561..3094043 + 483 WP_283056187.1 MarR family winged helix-turn-helix transcriptional regulator -
QA646_RS14885 (QA646_14885) 3094131..3095354 - 1224 WP_283056188.1 argininosuccinate synthase -
QA646_RS14890 (QA646_14890) 3095478..3095780 - 303 WP_283056189.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QA646_RS14895 (QA646_14895) 3095770..3096012 - 243 WP_283056190.1 type II toxin-antitoxin system ParD family antitoxin Antitoxin
QA646_RS14900 (QA646_14900) 3096100..3096954 + 855 WP_283056191.1 SDR family NAD(P)-dependent oxidoreductase -
QA646_RS14905 (QA646_14905) 3097020..3097661 + 642 WP_283056192.1 LysE family translocator -
QA646_RS14910 (QA646_14910) 3097645..3098073 - 429 WP_283056193.1 hypothetical protein -
QA646_RS14915 (QA646_14915) 3098079..3099314 - 1236 WP_283056194.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
QA646_RS14920 (QA646_14920) 3099577..3100137 - 561 WP_283056195.1 invasion associated locus B family protein -
QA646_RS14925 (QA646_14925) 3100467..3100856 - 390 WP_283056196.1 YkvA family protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(8-95)

Antitoxin

Antitoxin ParD

(3-79)


Sequences

Toxin        


Download         Length: 101 a.a.        Molecular weight: 11492.35 Da        Isoelectric Point: 10.3134

>T276515 WP_283056189.1 NZ_CP121662:c3095780-3095478 [Rhizobium sp. CB3090]
MPAKRRSYKLLPKARQDLDAIWRYTFETWSFQQANAYYNELIARFPELAAGAVRGRRINGVKPGYLALACGSHFIVYKDD
VEAVAIIRILHQRMNIGAHL

Download         Length: 303 bp

Antitoxin


Download         Length: 81 a.a.        Molecular weight: 8917.93 Da        Isoelectric Point: 4.3521

>AT276515 WP_283056190.1 NZ_CP121662:c3096012-3095770 [Rhizobium sp. CB3090]
VTKHMSVEIDEQMDVFIDEQISHGNYDSPSEVIDAALKLLRSRAEIEAIAAAIAEGEASGKPEEFDGEAFLKELHRKYAR

Download         Length: 243 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References