Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/RelE-RelB
Location 107225..107823 Replicon plasmid pCB3171_3
Accession NZ_CP121655
Organism Rhizobium sp. CB3171

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag QA648_RS34975 Protein ID WP_104825436.1
Coordinates 107530..107823 (+) Length 98 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag QA648_RS34970 Protein ID WP_283054768.1
Coordinates 107225..107533 (+) Length 103 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QA648_RS34945 (QA648_34945) 102844..103041 + 198 WP_283054924.1 hypothetical protein -
QA648_RS34950 (QA648_34950) 103290..105308 + 2019 WP_283054925.1 hypothetical protein -
QA648_RS34955 (QA648_34955) 105433..105669 + 237 WP_283054926.1 hypothetical protein -
QA648_RS34960 (QA648_34960) 105650..106636 + 987 WP_283054927.1 Fic family protein -
QA648_RS34965 (QA648_34965) 106767..106997 - 231 WP_283054767.1 hypothetical protein -
QA648_RS34970 (QA648_34970) 107225..107533 + 309 WP_283054768.1 type II toxin-antitoxin system RelB/DinJ family antitoxin Antitoxin
QA648_RS34975 (QA648_34975) 107530..107823 + 294 WP_104825436.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
QA648_RS34980 (QA648_34980) 107881..110235 - 2355 WP_283054769.1 type IV secretory system conjugative DNA transfer family protein -
QA648_RS34985 (QA648_34985) 110213..111259 - 1047 WP_283054770.1 P-type DNA transfer ATPase VirB11 -
QA648_RS34990 (QA648_34990) 111225..112592 - 1368 WP_283054771.1 type IV secretion system protein VirB10 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..212457 212457


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(3-90)

Antitoxin

RelB antitoxin/Antitoxin DinJ

(4-54)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 10583.03 Da        Isoelectric Point: 5.6864

>T276503 WP_104825436.1 NZ_CP121655:107530-107823 [Rhizobium sp. CB3171]
MKLIWSAFALADRDGIFTHIEADNPAAAASVDERIAAAARRLRDFPESGRPGRIAGTRELVITGTPYIAAYVVTETAVRI
LRVLHGAQQWPEALPED

Download         Length: 294 bp

Antitoxin


Download         Length: 103 a.a.        Molecular weight: 11139.53 Da        Isoelectric Point: 5.1771

>AT276503 WP_283054768.1 NZ_CP121655:107225-107533 [Rhizobium sp. CB3171]
MAANALVQTRIDSSVRDRASAVLESMGLTVSDAVRILLTRTANEGALPLELVTSSETHDAWFRGKVLEALNDTRPDIPDD
EVEAHFAERRAAARRKAADLKP

Download         Length: 309 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References