Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) rlegTA/AbiEii-AbiEi
Location 75699..77229 Replicon plasmid pCB82_1
Accession NZ_CP121651
Organism Bradyrhizobium sp. CB82

Toxin (Protein)


Gene name rlegT Uniprot ID -
Locus tag QA640_RS44120 Protein ID WP_283043593.1
Coordinates 75699..76592 (-) Length 298 a.a.

Antitoxin (Protein)


Gene name rlegA Uniprot ID -
Locus tag QA640_RS44125 Protein ID WP_283043861.1
Coordinates 76585..77229 (-) Length 215 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QA640_RS44100 (QA640_44100) 71435..71578 - 144 Protein_70 sarcosine oxidase subunit beta -
QA640_RS44105 (QA640_44105) 71575..71934 - 360 WP_283043591.1 hypothetical protein -
QA640_RS44110 (QA640_44110) 72498..73409 + 912 WP_283043592.1 SDR family NAD(P)-dependent oxidoreductase -
QA640_RS44115 (QA640_44115) 73837..75234 + 1398 WP_283037453.1 IS1380 family transposase -
QA640_RS44120 (QA640_44120) 75699..76592 - 894 WP_283043593.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein Toxin
QA640_RS44125 (QA640_44125) 76585..77229 - 645 WP_283043861.1 type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein Antitoxin
QA640_RS44130 (QA640_44130) 77372..78721 - 1350 WP_283043862.1 recombinase family protein -
QA640_RS44135 (QA640_44135) 78725..79078 - 354 Protein_77 recombinase family protein -
QA640_RS44140 (QA640_44140) 79653..80147 + 495 WP_283043594.1 hypothetical protein -
QA640_RS44145 (QA640_44145) 80287..80478 + 192 WP_283043595.1 hypothetical protein -
QA640_RS44150 (QA640_44150) 80557..80874 + 318 WP_283043596.1 hypothetical protein -
QA640_RS44155 (QA640_44155) 80948..81928 + 981 WP_283043597.1 toprim domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - katA 1..900293 900293
- flank IS/Tn - - 73837..75234 1397


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Nucleotidyl transferase AbiEii toxin, Type IV TA system

(42-262)

Antitoxin

Transcriptional regulator, AbiEi antitoxin

(11-57)


Sequences

Toxin        


Download         Length: 298 a.a.        Molecular weight: 33644.75 Da        Isoelectric Point: 8.4111

>T276489 WP_283043593.1 NZ_CP121651:c76592-75699 [Bradyrhizobium sp. CB82]
MPKKPKPPIKNMGASVRARLLNLSKQRRQPFDLLLNNYVLERLLYRLSQTKHHDRFILKGAILLTKWFEDPLRPTRDLDF
LAIGNDDQEEMVRIFQEVSAVHFNDGVVIDPDSVKVDRIREETEYGGLRITANAMIDNAKIRVVIDIAFGDSVEPGLQEM
DLPVLLDFPAPHLRAYARETVIAEKFQAMVMLGRANSRMKDLYDVWVLSRNFEFKDGKLPRAIAATFARRKTEIPSEIPD
ALTTAFAEDPTKVQQWNSFSVDVAFRPGTLADVVKDLSAFLVPHASAARSLGETRSA

Download         Length: 894 bp

Antitoxin


Download         Length: 215 a.a.        Molecular weight: 23858.77 Da        Isoelectric Point: 10.9064

>AT276489 WP_283043861.1 NZ_CP121651:c77229-76585 [Bradyrhizobium sp. CB82]
MLSASETQQDRAITLLKKRGMLRLSEFREAGITAATVSRMKEKGLILQLSRGLYQLPDASFDTHHALAEAAKLVPRGVIC
LTSALAFHGLTDTIPSRVWMAIGAKDRRPRIEAPPLQFVRFGEKVLTSGITQQKIEGVQVRIYNPAKTVVDLFRYRRSAG
KRYQKSPGLNLALEGLREALRQRKATPAEIARYANEAGIWKVVQPYLEAMTTNA

Download         Length: 645 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References