Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) pmenTA/-
Location 5480210..5480953 Replicon chromosome
Accession NZ_CP121647
Organism Bradyrhizobium sp. CB3481

Toxin (Protein)


Gene name pmenT Uniprot ID -
Locus tag QA643_RS26720 Protein ID WP_283034940.1
Coordinates 5480846..5480953 (-) Length 36 a.a.

Antitoxin (Protein)


Gene name pmenA Uniprot ID -
Locus tag QA643_RS26715 Protein ID WP_283028746.1
Coordinates 5480210..5480842 (-) Length 211 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QA643_RS26695 (QA643_26695) 5476622..5476839 - 218 Protein_5269 SOS response-associated peptidase -
QA643_RS26700 (QA643_26700) 5476968..5478003 + 1036 Protein_5270 IS110 family transposase -
QA643_RS26705 (QA643_26705) 5478726..5479208 - 483 WP_283028743.1 hypothetical protein -
QA643_RS26710 (QA643_26710) 5479829..5479830 - 2 WP_283028744.1 IS630 family transposase -
QA643_RS26715 (QA643_26715) 5480210..5480842 - 633 WP_283028746.1 macro domain-containing protein Antitoxin
QA643_RS26720 (QA643_26720) 5480846..5480953 - 108 WP_283034940.1 hypothetical protein Toxin
QA643_RS26725 (QA643_26725) 5480976..5481482 - 507 WP_283028747.1 DUF4433 domain-containing protein -
QA643_RS26730 (QA643_26730) 5483339..5485009 + 1671 WP_283028748.1 nodulation protein NodU -
QA643_RS26735 (QA643_26735) 5485050..5485208 + 159 WP_283028749.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 5464820..5485009 20189
- flank IS/Tn - - 5479236..5479631 395


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

Macro domain

(12-123)


Sequences

Toxin        


Download         Length: 36 a.a.        Molecular weight: 3938.63 Da        Isoelectric Point: 6.0412

>T276484 WP_283034940.1 NZ_CP121647:c5480953-5480846 [Bradyrhizobium sp. CB3481]
MGIACFNDAVKTEVEQLCDSKGLKLQIVARPNWFL

Download         Length: 108 bp

Antitoxin


Download         Length: 211 a.a.        Molecular weight: 23692.66 Da        Isoelectric Point: 9.3294

>AT276484 WP_283028746.1 NZ_CP121647:c5480842-5480210 [Bradyrhizobium sp. CB3481]
MIRFTQDAEALVNTVNTVGVMGKGVALMFKEAYPENFDAYEAACRSDEVQIGKMFVTERREMFGPKWIVNFPTKAHWRFP
SRIEWIVQGLEDLKRVIKETGIKSVALPPLGAGNGGLAWKDVRPKIEAALGELNDVDVIVYEPTAKYQNVAKRTVMEKLT
ATRALIAELVRRYSILGFDCTLLEIQKLAYFLKRDGVSLNRFGIPKSVCF

Download         Length: 633 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References