Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) PP_4151-4152/excise(antitoxin)
Location 4012174..4012960 Replicon chromosome
Accession NZ_CP121641
Organism Rhizobium sp. CC1099

Toxin (Protein)


Gene name PP_4152 Uniprot ID -
Locus tag QA644_RS19865 Protein ID WP_283070202.1
Coordinates 4012688..4012960 (+) Length 91 a.a.

Antitoxin (Protein)


Gene name PP_4151 Uniprot ID -
Locus tag QA644_RS19860 Protein ID WP_183906422.1
Coordinates 4012174..4012620 (+) Length 149 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
QA644_RS19835 (QA644_19835) 4008302..4010002 - 1701 WP_022713201.1 30S ribosomal protein S1 -
QA644_RS19840 (QA644_19840) 4010179..4010823 - 645 WP_074066193.1 (d)CMP kinase -
QA644_RS19845 (QA644_19845) 4010820..4011107 - 288 WP_283070195.1 hypothetical protein -
QA644_RS19850 (QA644_19850) 4011325..4011708 + 384 WP_022713204.1 TIGR02300 family protein -
QA644_RS19860 (QA644_19860) 4012174..4012620 + 447 WP_183906422.1 helix-turn-helix domain-containing protein Antitoxin
QA644_RS19865 (QA644_19865) 4012688..4012960 + 273 WP_283070202.1 hypothetical protein Toxin
QA644_RS19870 (QA644_19870) 4013471..4014595 + 1125 WP_283070204.1 DNA replication/repair protein RecF -
QA644_RS19875 (QA644_19875) 4014592..4015416 + 825 WP_239596210.1 molybdopterin-synthase adenylyltransferase MoeB -
QA644_RS19880 (QA644_19880) 4015413..4015886 + 474 WP_283070207.1 GNAT family N-acetyltransferase -
QA644_RS19885 (QA644_19885) 4015883..4016884 - 1002 WP_074066199.1 D-glycerate dehydrogenase -
QA644_RS19890 (QA644_19890) 4017071..4017610 + 540 WP_283070210.1 SH3 domain-containing protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin


No domain identified.


Antitoxin

SinI-like, DNA-binding domain

(78-122)


Sequences

Toxin        


Download         Length: 91 a.a.        Molecular weight: 10118.26 Da        Isoelectric Point: 4.3603

>T276475 WP_283070202.1 NZ_CP121641:4012688-4012960 [Rhizobium sp. CC1099]
MELAAAGQFRAKWSDEIHDEWTRNVLKNRDDLTIEQLGRTKDLMNAAVPDSVVDGYSDLVPALALPDPDDSRASGVTQDR
SRLREYLFAI

Download         Length: 273 bp

Antitoxin


Download         Length: 149 a.a.        Molecular weight: 16618.01 Da        Isoelectric Point: 5.9324

>AT276475 WP_183906422.1 NZ_CP121641:4012174-4012620 [Rhizobium sp. CC1099]
MSQLLERPILPSADDTELAAEASRYISRAKHEGAELRVQVDGGELLKLPKAVSELLYHLLTEMAQGNAVTLIPVHAELTT
QEAADHLNVSRPYLIKLLEEGKIPFHMVGSHRRIKFSDLDGFRRKAEDERKRLMDELASQAQDLGMGY

Download         Length: 447 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References