Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2067778..2068049 | Replicon | chromosome |
| Accession | NC_017664 | ||
| Organism | Escherichia coli W | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2067816..2067919 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2067778..2068049 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| WFL_RS10285 | 2064935..2066374 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| WFL_RS10290 | 2066492..2066728 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| WFL_RS10295 | 2066833..2067024 | + | 192 | WP_001296140.1 | YebW family protein | - |
| WFL_RS10300 | 2067025..2067681 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2067778..2068049 | + | 272 | - | - | Antitoxin |
| - | 2067816..2067919 | - | 104 | - | - | Toxin |
| WFL_RS10310 | 2068077..2068418 | - | 342 | WP_000976472.1 | YebY family protein | - |
| WFL_RS10315 | 2068431..2069303 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| WFL_RS10320 | 2069307..2069681 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| WFL_RS10325 | 2069820..2070050 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| WFL_RS10330 | 2070152..2070808 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| WFL_RS10335 | 2070832..2071494 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T27642 NC_017664:c2067919-2067816 [Escherichia coli W]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT27642 NC_017664:2067778-2068049 [Escherichia coli W]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
