Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/Phd(antitoxin)
Location 906909..907450 Replicon chromosome
Accession NZ_CP121476
Organism Pseudomonas sp. 905_Psudmo1

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag P9K38_RS04095 Protein ID WP_278326091.1
Coordinates 906909..907205 (-) Length 99 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag P9K38_RS04100 Protein ID WP_021487971.1
Coordinates 907193..907450 (-) Length 86 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P9K38_RS04085 (P9K38_04085) 904144..905586 + 1443 WP_278326089.1 TldD/PmbA family protein -
P9K38_RS04090 (P9K38_04090) 905586..906905 + 1320 WP_278326090.1 metallopeptidase TldD-related protein -
P9K38_RS04095 (P9K38_04095) 906909..907205 - 297 WP_278326091.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
P9K38_RS04100 (P9K38_04100) 907193..907450 - 258 WP_021487971.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
P9K38_RS04105 (P9K38_04105) 907519..908643 - 1125 WP_278326092.1 class I SAM-dependent methyltransferase -
P9K38_RS04110 (P9K38_04110) 908713..909489 + 777 WP_059390426.1 ferredoxin--NADP reductase -
P9K38_RS04115 (P9K38_04115) 909490..910515 - 1026 WP_021487974.1 hemolysin family protein -
P9K38_RS04120 (P9K38_04120) 910712..910960 + 249 WP_021487975.1 YdcH family protein -
P9K38_RS04125 (P9K38_04125) 911029..911307 + 279 WP_021487976.1 DUF465 domain-containing protein -
P9K38_RS04130 (P9K38_04130) 911383..911877 - 495 WP_031306393.1 GNAT family N-acetyltransferase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(4-90)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 99 a.a.        Molecular weight: 11451.30 Da        Isoelectric Point: 5.6268

>T276350 WP_278326091.1 NZ_CP121476:c907205-906909 [Pseudomonas sp. 905_Psudmo1]
MAEIVWTNTALEQLDDLAQYIALDKPDAARALVRRVVETVSRLVDFPLSGRVPDELPHSVYREIVVPPCRIFYRYTDTTV
FIIHIMREERVLRAHMLE

Download         Length: 297 bp

Antitoxin


Download         Length: 86 a.a.        Molecular weight: 9757.31 Da        Isoelectric Point: 7.3181

>AT276350 WP_021487971.1 NZ_CP121476:c907450-907193 [Pseudomonas sp. 905_Psudmo1]
MKVELVTNLKRQATKILADLHESKEPVLITEHGMPSAYLVDVDDYQFMQKRLALLDALARGERAVIEGNTLNHEQAKERL
SKWLK

Download         Length: 258 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References