Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2709151..2709360 | Replicon | chromosome |
| Accession | NZ_CP121269 | ||
| Organism | Enterobacter hormaechei subsp. xiangfangensis strain F81Y | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2709164..2709267 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2709151..2709360 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P9J39_RS12835 (P9J39_12835) | 2705419..2706867 | + | 1449 | WP_278105043.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| P9J39_RS12840 (P9J39_12840) | 2706974..2707213 | + | 240 | WP_003859885.1 | YebV family protein | - |
| P9J39_RS12845 (P9J39_12845) | 2707248..2707892 | - | 645 | WP_015570293.1 | protein-serine/threonine phosphatase | - |
| P9J39_RS12850 (P9J39_12850) | 2708060..2709040 | + | 981 | WP_278105048.1 | VirK/YbjX family protein | - |
| P9J39_RS12855 (P9J39_12855) | 2709086..2709283 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 2709151..2709360 | + | 210 | - | - | Antitoxin |
| - | 2709164..2709267 | - | 104 | - | - | Toxin |
| P9J39_RS12860 (P9J39_12860) | 2709409..2709747 | - | 339 | WP_003859787.1 | YebY family protein | - |
| P9J39_RS12865 (P9J39_12865) | 2709764..2710633 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| P9J39_RS12870 (P9J39_12870) | 2710635..2711006 | - | 372 | WP_278110281.1 | CopC domain-containing protein YobA | - |
| P9J39_RS12875 (P9J39_12875) | 2711144..2711374 | + | 231 | WP_003859784.1 | DNA polymerase III subunit theta | - |
| P9J39_RS12880 (P9J39_12880) | 2711486..2712136 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| P9J39_RS12885 (P9J39_12885) | 2712161..2712823 | + | 663 | WP_045339373.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T276165 NZ_CP121269:c2709267-2709164 [Enterobacter hormaechei subsp. xiangfangensis]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT276165 NZ_CP121269:2709151-2709360 [Enterobacter hormaechei subsp. xiangfangensis]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
