Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2886044..2886315 | Replicon | chromosome |
| Accession | NC_017660 | ||
| Organism | Escherichia coli KO11FL | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2886174..2886277 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2886044..2886315 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| KO11_RS14180 | 2882599..2883261 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| KO11_RS14185 | 2883285..2883941 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| KO11_RS14190 | 2884043..2884273 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| KO11_RS14195 | 2884412..2884786 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| KO11_RS14200 | 2884790..2885662 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| KO11_RS14205 | 2885675..2886016 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2886044..2886315 | - | 272 | - | - | Antitoxin |
| - | 2886174..2886277 | + | 104 | - | - | Toxin |
| KO11_RS14215 | 2886412..2887068 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| KO11_RS14220 | 2887069..2887260 | - | 192 | WP_001296140.1 | YebW family protein | - |
| KO11_RS14225 | 2887365..2887601 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| KO11_RS14230 | 2887719..2889158 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T27616 NC_017660:2886174-2886277 [Escherichia coli KO11FL]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT27616 NC_017660:c2886315-2886044 [Escherichia coli KO11FL]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
