Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) /BrnT(toxin)
Location 3482107..3482596 Replicon chromosome
Accession NZ_CP121193
Organism Halomonas sp. CKK8

Toxin (Protein)


Gene name - Uniprot ID -
Locus tag P8934_RS16410 Protein ID WP_278031968.1
Coordinates 3482107..3482373 (+) Length 89 a.a.

Antitoxin (Protein)


Gene name - Uniprot ID -
Locus tag P8934_RS16415 Protein ID WP_278031969.1
Coordinates 3482360..3482596 (+) Length 79 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P8934_RS16390 (P8934_16390) 3477374..3478129 - 756 WP_278031964.1 peptidoglycan editing factor PgeF -
P8934_RS16395 (P8934_16395) 3478140..3479099 - 960 WP_278031965.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
P8934_RS16400 (P8934_16400) 3479225..3480040 + 816 WP_278031966.1 outer membrane protein assembly factor BamD -
P8934_RS16405 (P8934_16405) 3480187..3482034 + 1848 WP_278031967.1 sensor domain-containing diguanylate cyclase -
P8934_RS16410 (P8934_16410) 3482107..3482373 + 267 WP_278031968.1 BrnT family toxin Toxin
P8934_RS16415 (P8934_16415) 3482360..3482596 + 237 WP_278031969.1 CopG family transcriptional regulator Antitoxin
P8934_RS16420 (P8934_16420) 3482686..3484317 - 1632 WP_278031970.1 NAD+ synthase -
P8934_RS16425 (P8934_16425) 3484419..3484730 + 312 WP_278031971.1 PP0621 family protein -
P8934_RS16430 (P8934_16430) 3484918..3485463 + 546 WP_278031972.1 GspH/FimT family pseudopilin -
P8934_RS16435 (P8934_16435) 3485659..3486282 + 624 WP_278031973.1 hypothetical protein -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(6-81)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 89 a.a.        Molecular weight: 10228.56 Da        Isoelectric Point: 7.3194

>T276033 WP_278031968.1 NZ_CP121193:3482107-3482373 [Halomonas sp. CKK8]
MDAFEFDSGKSEANRHKHGIDFVDAQRLWEDPDLLEIPAKTMDEPRFVVIGRIDGKHWSGIITYRGRRIRLISVRRSRSS
EVALYESP

Download         Length: 267 bp

Antitoxin


Download         Length: 79 a.a.        Molecular weight: 9108.20 Da        Isoelectric Point: 6.0700

>AT276033 WP_278031969.1 NZ_CP121193:3482360-3482596 [Halomonas sp. CKK8]
MKAHDLDNRFDDGDDIIDELDLSQASRPLRKQKRVNVDFPTWMIDSLDREAARLGVTRQSIIKIWLAERLEQHGSHSH

Download         Length: 237 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References