Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2659782..2660053 | Replicon | chromosome |
| Accession | NZ_CP121157 | ||
| Organism | Escherichia coli strain E89 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2659820..2659923 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2659782..2660053 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P6H86_RS13005 | 2656939..2658378 | + | 1440 | WP_032187451.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| P6H86_RS13010 | 2658496..2658732 | + | 237 | WP_001338166.1 | YebV family protein | - |
| P6H86_RS13015 | 2658837..2659028 | + | 192 | WP_001338167.1 | YebW family protein | - |
| P6H86_RS13020 | 2659029..2659685 | - | 657 | WP_066018957.1 | protein-serine/threonine phosphatase | - |
| - | 2659782..2660053 | + | 272 | - | - | Antitoxin |
| - | 2659820..2659923 | - | 104 | - | - | Toxin |
| P6H86_RS13025 | 2660081..2660422 | - | 342 | WP_000976472.1 | YebY family protein | - |
| P6H86_RS13030 | 2660435..2661307 | - | 873 | WP_000879295.1 | copper homeostasis membrane protein CopD | - |
| P6H86_RS13035 | 2661311..2661685 | - | 375 | WP_066018956.1 | CopC domain-containing protein YobA | - |
| P6H86_RS13040 | 2661824..2662054 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| P6H86_RS13045 | 2662156..2662812 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein YobB | - |
| P6H86_RS13050 | 2662836..2663498 | + | 663 | WP_000944258.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T275990 NZ_CP121157:c2659923-2659820 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT275990 NZ_CP121157:2659782-2660053 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGTTTTTTTTAT
