Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2355189..2355460 | Replicon | chromosome |
| Accession | NZ_CP121151 | ||
| Organism | Escherichia coli strain E47 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2355319..2355422 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2355189..2355460 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P6H31_RS11785 | 2351744..2352406 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| P6H31_RS11790 | 2352430..2353086 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| P6H31_RS11795 | 2353188..2353418 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| P6H31_RS11800 | 2353557..2353931 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| P6H31_RS11805 | 2353935..2354807 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| P6H31_RS11810 | 2354820..2355161 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 2355189..2355460 | - | 272 | - | - | Antitoxin |
| - | 2355319..2355422 | + | 104 | - | - | Toxin |
| P6H31_RS11815 | 2355557..2356213 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| P6H31_RS11820 | 2356214..2356405 | - | 192 | WP_001296140.1 | YebW family protein | - |
| P6H31_RS11825 | 2356510..2356746 | - | 237 | WP_001295499.1 | YebV family protein | - |
| P6H31_RS11830 | 2356864..2358303 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T275905 NZ_CP121151:2355319-2355422 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT275905 NZ_CP121151:c2355460-2355189 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
