Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2189547..2189818 | Replicon | chromosome |
| Accession | NZ_CP121149 | ||
| Organism | Escherichia coli strain E14 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2189677..2189780 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2189547..2189818 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P1I99_RS10615 | 2186102..2186764 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| P1I99_RS10620 | 2186788..2187444 | - | 657 | WP_000011652.1 | carbon-nitrogen hydrolase family protein YobB | - |
| P1I99_RS10625 | 2187546..2187776 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| P1I99_RS10630 | 2187915..2188289 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| P1I99_RS10635 | 2188293..2189165 | + | 873 | WP_000879285.1 | copper homeostasis membrane protein CopD | - |
| P1I99_RS10640 | 2189178..2189519 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2189547..2189818 | - | 272 | - | - | Antitoxin |
| - | 2189677..2189780 | + | 104 | - | - | Toxin |
| P1I99_RS10645 | 2189915..2190571 | + | 657 | WP_000812734.1 | protein-serine/threonine phosphatase | - |
| P1I99_RS10650 | 2190572..2190763 | - | 192 | WP_001296140.1 | YebW family protein | - |
| P1I99_RS10655 | 2190868..2191104 | - | 237 | WP_001295499.1 | YebV family protein | - |
| P1I99_RS10660 | 2191222..2192661 | - | 1440 | WP_024190454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T275884 NZ_CP121149:2189677-2189780 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT275884 NZ_CP121149:c2189818-2189547 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
