Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3352375..3352520 | Replicon | chromosome |
| Accession | NZ_CP121145 | ||
| Organism | Klebsiella pneumoniae strain UHD-56_PH | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3352382..3352484 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3352375..3352520 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P8T43_RS16080 (P8T43_16075) | 3347907..3349340 | + | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| P8T43_RS16085 (P8T43_16080) | 3349456..3349695 | + | 240 | WP_002911393.1 | YebV family protein | - |
| P8T43_RS16090 (P8T43_16085) | 3349793..3349984 | + | 192 | WP_002911395.1 | YebW family protein | - |
| P8T43_RS16095 (P8T43_16090) | 3349981..3350634 | - | 654 | WP_032415192.1 | protein-serine/threonine phosphatase | - |
| P8T43_RS16100 (P8T43_16095) | 3350791..3351759 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| P8T43_RS16105 (P8T43_16100) | 3351864..3352007 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3352375..3352520 | + | 146 | - | - | Antitoxin |
| - | 3352382..3352484 | - | 103 | - | - | Toxin |
| P8T43_RS16110 (P8T43_16105) | 3352643..3352981 | - | 339 | WP_002911404.1 | YebY family protein | - |
| P8T43_RS16115 (P8T43_16110) | 3352998..3353867 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| P8T43_RS16120 (P8T43_16115) | 3353871..3354245 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| P8T43_RS16125 (P8T43_16120) | 3354358..3354588 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| P8T43_RS16130 (P8T43_16125) | 3354667..3355326 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| P8T43_RS16135 (P8T43_16130) | 3355330..3357390 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T275843 NZ_CP121145:c3352484-3352382 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT275843 NZ_CP121145:3352375-3352520 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
