Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3056542..3056687 | Replicon | chromosome |
| Accession | NZ_CP121139 | ||
| Organism | Klebsiella pneumoniae strain UHD-4_PH | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3056549..3056651 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3056542..3056687 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P8T35_RS14670 (P8T35_14670) | 3052074..3053507 | + | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| P8T35_RS14675 (P8T35_14675) | 3053623..3053862 | + | 240 | WP_002911393.1 | YebV family protein | - |
| P8T35_RS14680 (P8T35_14680) | 3053960..3054151 | + | 192 | WP_002911395.1 | YebW family protein | - |
| P8T35_RS14685 (P8T35_14685) | 3054148..3054801 | - | 654 | WP_032415192.1 | protein-serine/threonine phosphatase | - |
| P8T35_RS14690 (P8T35_14690) | 3054958..3055926 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| P8T35_RS14695 (P8T35_14695) | 3056031..3056174 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3056542..3056687 | + | 146 | - | - | Antitoxin |
| - | 3056549..3056651 | - | 103 | - | - | Toxin |
| P8T35_RS14700 (P8T35_14700) | 3056810..3057148 | - | 339 | WP_002911404.1 | YebY family protein | - |
| P8T35_RS14705 (P8T35_14705) | 3057165..3058034 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| P8T35_RS14710 (P8T35_14710) | 3058038..3058412 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| P8T35_RS14715 (P8T35_14715) | 3058525..3058755 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| P8T35_RS14720 (P8T35_14720) | 3058834..3059493 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| P8T35_RS14725 (P8T35_14725) | 3059497..3061557 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T275797 NZ_CP121139:c3056651-3056549 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT275797 NZ_CP121139:3056542-3056687 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
