Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 754472..754617 | Replicon | chromosome |
| Accession | NZ_CP121137 | ||
| Organism | Klebsiella pneumoniae strain UHD-33_PH | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 754508..754610 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 754472..754617 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P8T49_RS03635 (P8T49_03635) | 749602..751662 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| P8T49_RS03640 (P8T49_03640) | 751666..752325 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| P8T49_RS03645 (P8T49_03645) | 752404..752634 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| P8T49_RS03650 (P8T49_03650) | 752747..753121 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| P8T49_RS03655 (P8T49_03655) | 753125..753994 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| P8T49_RS03660 (P8T49_03660) | 754011..754349 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 754472..754617 | - | 146 | - | - | Antitoxin |
| - | 754508..754610 | + | 103 | - | - | Toxin |
| P8T49_RS03665 (P8T49_03665) | 754985..755128 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| P8T49_RS03670 (P8T49_03670) | 755233..756201 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| P8T49_RS03675 (P8T49_03675) | 756358..757011 | + | 654 | WP_032415192.1 | protein-serine/threonine phosphatase | - |
| P8T49_RS03680 (P8T49_03680) | 757008..757199 | - | 192 | WP_002911395.1 | YebW family protein | - |
| P8T49_RS03685 (P8T49_03685) | 757297..757536 | - | 240 | WP_002911393.1 | YebV family protein | - |
| P8T49_RS03690 (P8T49_03690) | 757652..759085 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T275777 NZ_CP121137:754508-754610 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT275777 NZ_CP121137:c754617-754472 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
