Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2274741..2275012 | Replicon | chromosome |
| Accession | NC_017656 | ||
| Organism | Escherichia coli O55:H7 str. RM12579 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2274779..2274882 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2274741..2275012 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| ECO55CA74_RS11460 | 2271898..2273337 | + | 1440 | WP_001419087.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| ECO55CA74_RS11465 | 2273455..2273691 | + | 237 | WP_001359800.1 | DUF1480 family protein | - |
| ECO55CA74_RS11470 | 2273796..2273987 | + | 192 | WP_001296140.1 | YebW family protein | - |
| ECO55CA74_RS11475 | 2273988..2274644 | - | 657 | WP_000812736.1 | protein-serine/threonine phosphatase | - |
| - | 2274741..2275012 | + | 272 | - | - | Antitoxin |
| - | 2274779..2274882 | - | 104 | - | - | Toxin |
| ECO55CA74_RS11485 | 2275040..2275381 | - | 342 | WP_000976483.1 | YebY family protein | - |
| ECO55CA74_RS11490 | 2275394..2276266 | - | 873 | WP_000879314.1 | copper homeostasis membrane protein CopD | - |
| ECO55CA74_RS11495 | 2276270..2276644 | - | 375 | WP_000168751.1 | CopC domain-containing protein YobA | - |
| ECO55CA74_RS11500 | 2276783..2277013 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| ECO55CA74_RS11505 | 2277115..2277771 | + | 657 | WP_000011661.1 | carbon-nitrogen hydrolase family protein | - |
| ECO55CA74_RS11510 | 2277795..2278457 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T27576 NC_017656:c2274882-2274779 [Escherichia coli O55:H7 str. RM12579]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT27576 NC_017656:2274741-2275012 [Escherichia coli O55:H7 str. RM12579]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
