Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3298063..3298208 | Replicon | chromosome |
| Accession | NZ_CP121133 | ||
| Organism | Klebsiella pneumoniae strain UHD-45_PH | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3298070..3298172 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3298063..3298208 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P8T31_RS15820 (P8T31_15820) | 3293595..3295028 | + | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| P8T31_RS15825 (P8T31_15825) | 3295144..3295383 | + | 240 | WP_002911393.1 | YebV family protein | - |
| P8T31_RS15830 (P8T31_15830) | 3295481..3295672 | + | 192 | WP_002911395.1 | YebW family protein | - |
| P8T31_RS15835 (P8T31_15835) | 3295669..3296322 | - | 654 | WP_032415192.1 | protein-serine/threonine phosphatase | - |
| P8T31_RS15840 (P8T31_15840) | 3296479..3297447 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| P8T31_RS15845 (P8T31_15845) | 3297552..3297695 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3298063..3298208 | + | 146 | - | - | Antitoxin |
| - | 3298070..3298172 | - | 103 | - | - | Toxin |
| P8T31_RS15850 (P8T31_15850) | 3298331..3298669 | - | 339 | WP_002911404.1 | YebY family protein | - |
| P8T31_RS15855 (P8T31_15855) | 3298686..3299555 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| P8T31_RS15860 (P8T31_15860) | 3299559..3299933 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| P8T31_RS15865 (P8T31_15865) | 3300046..3300276 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| P8T31_RS15870 (P8T31_15870) | 3300355..3301014 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| P8T31_RS15875 (P8T31_15875) | 3301018..3303078 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T275753 NZ_CP121133:c3298172-3298070 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT275753 NZ_CP121133:3298063-3298208 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
