Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 195629..195774 | Replicon | chromosome |
| Accession | NZ_CP121131 | ||
| Organism | Klebsiella pneumoniae strain UHD-50_PH | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 195665..195767 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 195629..195774 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P8T45_RS01050 (P8T45_01050) | 190759..192819 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| P8T45_RS01055 (P8T45_01055) | 192823..193482 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| P8T45_RS01060 (P8T45_01060) | 193561..193791 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| P8T45_RS01065 (P8T45_01065) | 193904..194278 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| P8T45_RS01070 (P8T45_01070) | 194282..195151 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| P8T45_RS01075 (P8T45_01075) | 195168..195506 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 195629..195774 | - | 146 | - | - | Antitoxin |
| - | 195665..195767 | + | 103 | - | - | Toxin |
| P8T45_RS01080 (P8T45_01080) | 196142..196285 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| P8T45_RS01085 (P8T45_01085) | 196390..197358 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| P8T45_RS01090 (P8T45_01090) | 197515..198168 | + | 654 | WP_032415192.1 | protein-serine/threonine phosphatase | - |
| P8T45_RS01095 (P8T45_01095) | 198165..198356 | - | 192 | WP_002911395.1 | YebW family protein | - |
| P8T45_RS01100 (P8T45_01100) | 198454..198693 | - | 240 | WP_002911393.1 | YebV family protein | - |
| P8T45_RS01105 (P8T45_01105) | 198809..200242 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T275732 NZ_CP121131:195665-195767 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT275732 NZ_CP121131:c195774-195629 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
