Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3193688..3193833 | Replicon | chromosome |
| Accession | NZ_CP121129 | ||
| Organism | Klebsiella pneumoniae strain UHD-49_PH | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3193695..3193797 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3193688..3193833 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P8T37_RS15340 (P8T37_15340) | 3189220..3190653 | + | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| P8T37_RS15345 (P8T37_15345) | 3190769..3191008 | + | 240 | WP_002911393.1 | YebV family protein | - |
| P8T37_RS15350 (P8T37_15350) | 3191106..3191297 | + | 192 | WP_002911395.1 | YebW family protein | - |
| P8T37_RS15355 (P8T37_15355) | 3191294..3191947 | - | 654 | WP_032415192.1 | protein-serine/threonine phosphatase | - |
| P8T37_RS15360 (P8T37_15360) | 3192104..3193072 | + | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| P8T37_RS15365 (P8T37_15365) | 3193177..3193320 | + | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| - | 3193688..3193833 | + | 146 | - | - | Antitoxin |
| - | 3193695..3193797 | - | 103 | - | - | Toxin |
| P8T37_RS15370 (P8T37_15370) | 3193956..3194294 | - | 339 | WP_002911404.1 | YebY family protein | - |
| P8T37_RS15375 (P8T37_15375) | 3194311..3195180 | - | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| P8T37_RS15380 (P8T37_15380) | 3195184..3195558 | - | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| P8T37_RS15385 (P8T37_15385) | 3195671..3195901 | + | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| P8T37_RS15390 (P8T37_15390) | 3195980..3196639 | + | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| P8T37_RS15395 (P8T37_15395) | 3196643..3198703 | - | 2061 | WP_004148850.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T275722 NZ_CP121129:c3193797-3193695 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT275722 NZ_CP121129:3193688-3193833 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
