Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1596750..1596895 | Replicon | chromosome |
| Accession | NZ_CP121127 | ||
| Organism | Klebsiella pneumoniae strain UHD-53_PH | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1596786..1596888 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1596750..1596895 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P8T39_RS07950 (P8T39_07950) | 1591880..1593940 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| P8T39_RS07955 (P8T39_07955) | 1593944..1594603 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| P8T39_RS07960 (P8T39_07960) | 1594682..1594912 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| P8T39_RS07965 (P8T39_07965) | 1595025..1595399 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| P8T39_RS07970 (P8T39_07970) | 1595403..1596272 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| P8T39_RS07975 (P8T39_07975) | 1596289..1596627 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1596750..1596895 | - | 146 | - | - | Antitoxin |
| - | 1596786..1596888 | + | 103 | - | - | Toxin |
| P8T39_RS07980 (P8T39_07980) | 1597263..1597406 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| P8T39_RS07985 (P8T39_07985) | 1597511..1598479 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| P8T39_RS07990 (P8T39_07990) | 1598636..1599289 | + | 654 | WP_032415192.1 | protein-serine/threonine phosphatase | - |
| P8T39_RS07995 (P8T39_07995) | 1599286..1599477 | - | 192 | WP_002911395.1 | YebW family protein | - |
| P8T39_RS08000 (P8T39_08000) | 1599575..1599814 | - | 240 | WP_002911393.1 | YebV family protein | - |
| P8T39_RS08005 (P8T39_08005) | 1599930..1601363 | - | 1434 | WP_032415191.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T275703 NZ_CP121127:1596786-1596888 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT275703 NZ_CP121127:c1596895-1596750 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
