Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) shpAB/BrnT-BrnA
Location 134901..135483 Replicon chromosome
Accession NZ_CP121108
Organism Pantoea sp. X85

Toxin (Protein)


Gene name shpA Uniprot ID -
Locus tag P6287_RS00625 Protein ID WP_110867898.1
Coordinates 134901..135194 (+) Length 98 a.a.

Antitoxin (Protein)


Gene name shpB Uniprot ID -
Locus tag P6287_RS00630 Protein ID WP_192236869.1
Coordinates 135181..135483 (+) Length 101 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P6287_RS00615 (P6287_00615) 133264..133710 + 447 WP_110867897.1 cellulose biosynthesis protein BcsD -
P6287_RS00620 (P6287_00620) 133720..134724 + 1005 WP_277974353.1 glycosyl hydrolase family 8 -
P6287_RS00625 (P6287_00625) 134901..135194 + 294 WP_110867898.1 BrnT family toxin Toxin
P6287_RS00630 (P6287_00630) 135181..135483 + 303 WP_192236869.1 BrnA antitoxin family protein Antitoxin
P6287_RS00635 (P6287_00635) 135510..138899 - 3390 WP_277974354.1 cellulose synthase complex outer membrane protein BcsC -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Ribonuclease toxin, BrnT, of type II toxin-antitoxin system

(9-90)

Antitoxin

BrnA antitoxin of type II toxin-antitoxin system

(41-93)


Sequences

Toxin        


Download         Length: 98 a.a.        Molecular weight: 11510.92 Da        Isoelectric Point: 6.9795

>T275687 WP_110867898.1 NZ_CP121108:134901-135194 [Pantoea sp. X85]
MQTELEFEWDLSKAESNHRKHGIRFEIAVRVFDDPFHLSSQDRCENGEYRWQSIGNVMGHIIILVAHTVRFEQGTEIIRI
ISARPATRNERRRYEQG

Download         Length: 294 bp

Antitoxin


Download         Length: 101 a.a.        Molecular weight: 11323.92 Da        Isoelectric Point: 9.0111

>AT275687 WP_192236869.1 NZ_CP121108:135181-135483 [Pantoea sp. X85]
MSKVRFKRSELPPLSDSLQSELDALSQKPDSEIDCGEIAPLNERFWNSASSGRFYRPIKTQASVRIDADVLEWLKAPGKG
YQTRLNAILRAAMLRELESK

Download         Length: 303 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References