Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 273490..273761 | Replicon | chromosome |
| Accession | NZ_CP121087 | ||
| Organism | Escherichia coli strain ST3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 273620..273723 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 273490..273761 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P5670_RS01375 | 270045..270707 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| P5670_RS01380 | 270731..271387 | - | 657 | WP_000011651.1 | carbon-nitrogen hydrolase family protein YobB | - |
| P5670_RS01385 | 271489..271719 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| P5670_RS01390 | 271858..272232 | + | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| P5670_RS01395 | 272236..273108 | + | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| P5670_RS01400 | 273121..273462 | + | 342 | WP_000976481.1 | YebY family protein | - |
| - | 273490..273761 | - | 272 | - | - | Antitoxin |
| - | 273620..273723 | + | 104 | - | - | Toxin |
| P5670_RS01405 | 273858..274514 | + | 657 | WP_000812712.1 | protein-serine/threonine phosphatase | - |
| P5670_RS01410 | 274515..274706 | - | 192 | WP_001296140.1 | YebW family protein | - |
| P5670_RS01415 | 274811..275047 | - | 237 | WP_001295499.1 | YebV family protein | - |
| P5670_RS01420 | 275165..276604 | - | 1440 | WP_001309555.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 266180..276610 | 10430 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T275653 NZ_CP121087:273620-273723 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT275653 NZ_CP121087:c273761-273490 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
