275638

Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) stbDE/ParE-YafN
Location 2298026..2298548 Replicon chromosome
Accession NZ_CP121076
Organism Salmonella enterica subsp. enterica serovar Infantis strain R22.3740

Toxin (Protein)


Gene name stbE Uniprot ID B5F5Y5
Locus tag P8I06_RS11220 Protein ID WP_000221343.1
Coordinates 2298026..2298310 (-) Length 95 a.a.

Antitoxin (Protein)


Gene name stbD Uniprot ID A0A5X3FYG4
Locus tag P8I06_RS11225 Protein ID WP_000885426.1
Coordinates 2298300..2298548 (-) Length 83 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P8I06_RS11200 (2294105) 2294105..2295613 - 1509 WP_023993260.1 FAD-dependent oxidoreductase -
P8I06_RS11205 (2295658) 2295658..2296146 + 489 WP_001293634.1 MarR family winged helix-turn-helix transcriptional regulator -
P8I06_RS11210 (2296339) 2296339..2297418 + 1080 WP_023993261.1 S-adenosylmethionine:tRNA ribosyltransferase-isomerase -
P8I06_RS11215 (2297466) 2297466..2297855 - 390 WP_023993262.1 RidA family protein -
P8I06_RS11220 (2298026) 2298026..2298310 - 285 WP_000221343.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
P8I06_RS11225 (2298300) 2298300..2298548 - 249 WP_000885426.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
P8I06_RS11230 (2298700) 2298700..2298915 + 216 WP_023993263.1 phage protein -
P8I06_RS11235 (2298905) 2298905..2299237 + 333 WP_000253154.1 DUF1493 family protein -
P8I06_RS11240 (2299517) 2299517..2299711 + 195 Protein_2202 hypothetical protein -
P8I06_RS11245 (2299710) 2299710..2300156 - 447 Protein_2203 helix-turn-helix domain-containing protein -
P8I06_RS11250 (2301062) 2301062..2301970 + 909 WP_242211998.1 LysR family transcriptional regulator -
P8I06_RS11255 (2302144) 2302144..2303124 + 981 WP_023993266.1 nitronate monooxygenase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Genomic island - - 2292668..2304853 12185


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-84)

Antitoxin


No domain identified.



Sequences

Toxin        


Download         Length: 95 a.a.        Molecular weight: 11075.85 Da        Isoelectric Point: 10.6500

>T275638 WP_000221343.1 NZ_CP121076:c2298310-2298026 [Salmonella enterica subsp. enterica serovar Infantis]
MTYKLAFNESALKEWKKLGHTIQEQFKKKLRERLENPRVPASQLHGRKDQYKIKLRGAGYRLVYSVEDEIITVTVIGVGK
RENDAVYKMTRHRS

Download         Length: 285 bp

Antitoxin


Download         Length: 83 a.a.        Molecular weight: 9104.35 Da        Isoelectric Point: 3.9947

>AT275638 WP_000885426.1 NZ_CP121076:c2298548-2298300 [Salmonella enterica subsp. enterica serovar Infantis]
MAFQILTTTAASITELKRDPMGTFNAGEGAPVAILNRNEPAFYCVPPALYAHLMDILEDEELGRIIDERANERVIEVNID
DL

Download         Length: 249 bp


Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A5H5JSW4

Antitoxin

Source ID Structure
AlphaFold DB A0A5X3FYG4

References